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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Neem_4822_f_3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family |
MIKC_MADS |
Protein Properties |
Length: 281aa MW: 33107.8 Da PI: 9.4251 |
Description |
MIKC_MADS family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 82.5 | 2.6e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien + rqvtfskRr+g+lKK +ELSvLCda++ +iifsstgkl y++
Neem_4822_f_3 9 KRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCT 59
79***********************************************96 PP
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2 | K-box | 69.3 | 1.2e-23 | 83 | 166 | 12 | 95 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95
e+l +el L+ke++ Lq + R++ Ge+L+s+ +++L +Leq+Le+s++k+R +Knell +q+++l++ke++l+een ++r
Neem_4822_f_3 83 DSREQLLNELGVLRKETRHLQLSMRRYTGENLSSIPYEDLDELEQELERSVNKVRGRKNELLQQQLDNLRRKERMLEEENSNIR 166
45678999************************************************************************9986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 9.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.557 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.37E-37 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 6.41E-29 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.0E-22 | 81 | 166 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.393 | 85 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MGRGKIEIKR IENPTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFSS TGKLCQYCTE 60 PYRIEQIIKR RTKVTGIRIP EHDSREQLLN ELGVLRKETR HLQLSMRRYT GENLSSIPYE 120 DLDELEQELE RSVNKVRGRK NELLQQQLDN LRRKERMLEE ENSNIRPPDE AKVGRNQLNM 180 RRDNKAYPRH GGLRGCRTCL SAGRVTLCFH ECRTTRERML EEENSNMYRW IQEHRAAMEY 240 QQQILDHFPF CSEQLQTSTV QLQLATNTIP PQIHPYHLQL A
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |