PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4779_f_13
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 443aa    MW: 49338.2 Da    PI: 5.0701
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4779_f_13genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.21.2e-92444362373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfs 94 
                     ++lLl+cA a++s+d +laq++++ l++ asp gdp+qRl+++f++AL +r +r ++++ +   +s+t++    + +++++l  ++++ P+++f+
  Neem_4779_f_13  44 EKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSCFLRALISRASRVCPTTLNFNGSSTTQR----RLMSVTELagYVDLIPWHRFG 134
                     689***************************************************9999997766655553....3333333344*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl..... 181
                     + + N+aIl+a++g  +vHi+Df+i++++QWp+L++aLa+RpegppslRiT+ +   ++    + ++ee+g rL +fA+  +vpfefnv+     
  Neem_4779_f_13 135 FSASNSAILKAIQGYPKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPSCRPPVpplLNVSTEEVGLRLGNFAKFRDVPFEFNVIddpss 229
                     ***************************************************97776566779999****************************** PP

            GRAS 182 ...............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                                     ++ l++l++++L++  +Eal++n++  l +l de+  +++   rd++L+++k+l+P ++vvv++++d++++s+  r++ 
  Neem_4779_f_13 230 atssdilskescsfpFESLLNNLTPSMLKLGDDEALVINCQNWLRYLSDERKGSTDvsLRDAFLHIIKGLNPCIIVVVDEDSDLSASSLTSRITT 324
                     **999999998888777889999*************************99987776679************************************ PP

            GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                     +++y ++ fd+le+ lp++s++r  +E+  +g++i+n+++ eg++r er e+ +k ++r+++a F ++p+se+++ ++k+ll +++  g+ ++ +
  Neem_4779_f_13 325 CFNYLWMPFDALETFLPKDSHQRLEYEAD-IGQKIENIISFEGFQRMERLESGSKLSQRMKNAEFFSLPFSEETVREVKSLLDEHA-GGWGMKRD 417
                     *****************************.********************************************************.789999** PP

            GRAS 355 sgslvlgWkdrpLvsvSaW 373
                     ++ lvl+Wk+++ v+++aW
  Neem_4779_f_13 418 EDMLVLTWKGHNSVFATAW 436
                     ******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.83517418IPR005202Transcription factor GRAS
PfamPF035144.3E-9044436IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MKAELRANTT SISLQNPSLF NNPQNSLPGA LRGCLDSLDG ACIEKLLLHC ASALESNDVT  60
LAQQVMWVLN NVASPVGDPN QRLTSCFLRA LISRASRVCP TTLNFNGSST TQRRLMSVTE  120
LAGYVDLIPW HRFGFSASNS AILKAIQGYP KVHILDFSIT HCMQWPTLID ALAKRPEGPP  180
SLRITVPSCR PPVPPLLNVS TEEVGLRLGN FAKFRDVPFE FNVIDDPSSA TSSDILSKES  240
CSFPFESLLN NLTPSMLKLG DDEALVINCQ NWLRYLSDER KGSTDVSLRD AFLHIIKGLN  300
PCIIVVVDED SDLSASSLTS RITTCFNYLW MPFDALETFL PKDSHQRLEY EADIGQKIEN  360
IISFEGFQRM ERLESGSKLS QRMKNAEFFS LPFSEETVRE VKSLLDEHAG GWGMKRDEDM  420
LVLTWKGHNS VFATAWVPNG LED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B4e-551643911421Protein SHORT-ROOT
5b3h_E4e-551643911421Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022749084.10.0scarecrow-like protein 32
TrEMBLA0A061EAD40.0A0A061EAD4_THECC; GRAS family transcription factor
STRINGEOX992080.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17642910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-130GRAS family protein