PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4567_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 172aa    MW: 18773 Da    PI: 4.9966
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4567_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55e-161260255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+G+r ++   +Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Neem_4567_f_1 12 LYRGIRCRS--SKWVSEIREPRK---STRIWLGTYPTPEMAAAAYDVAALALKG 60
                   69***9766..5********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.4E-101160IPR001471AP2/ERF domain
CDDcd000184.57E-161169No hitNo description
SMARTSM003802.6E-271274IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-181269IPR016177DNA-binding domain
PROSITE profilePS5103219.5061268IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-251269IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MATSSSSKKH PLYRGIRCRS SKWVSEIREP RKSTRIWLGT YPTPEMAAAA YDVAALALKG  60
GDAVLNFPNF VSRYPVPASM SSADIRSAAA AAAALRKPET VSDCHNQRIE QSTNNDNDHD  120
TVEFVDEEAL LNMPNLLVDM AEGMMVSPPR INSPPSDGSP ENSDGESLWS YL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-139691173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440530.24e-78LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF027
SwissprotQ9CAN96e-58ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLV4TQ112e-77V4TQ11_9ROSI; Uncharacterized protein
STRINGXP_006440530.14e-78(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.19e-47ERF family protein