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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_435_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 506aa MW: 55909.3 Da PI: 8.3125 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.8 | 1.9e-32 | 219 | 277 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +dDgynWrKYGqK++kgse+prsYY+Ct+ +C vkkkvers+ d++v +i+Y++eHnhek Neem_435_f_4 219 VDDGYNWRKYGQKPIKGSEYPRSYYKCTHLNCLVKKKVERSS-DGQVAQIIYKNEHNHEK 277 59****************************************.***************85 PP | |||||||
2 | WRKY | 104.5 | 5.6e-33 | 392 | 450 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+ +d k+v++tYeg+Hnh+ Neem_435_f_4 392 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNPGCNVRKHVERAPTDSKAVITTYEGKHNHD 450 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-28 | 213 | 279 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.673 | 214 | 278 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-26 | 217 | 278 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-37 | 219 | 277 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-24 | 220 | 276 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-36 | 377 | 452 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-29 | 384 | 452 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.964 | 387 | 452 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-39 | 392 | 451 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.9E-26 | 393 | 450 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MAPGKEAEDS AKKMRPTIIL PPRPSTDSLY GSGFSPGPMT LVSSFFAEEL NNQSFSQLLA 60 GAMASPLARQ TQSFLVDNSK ESGNTDGDEK SSGFKESRPR NLVVARSPLF TVPPGLSPSG 120 LLNSPGFFSP QSPFGMSHQQ ALATVTAQAL FAQSNMQMQA EYQPSLLPPP AESVTVDEAF 180 QQQMQPSQSD PQSSAMESSQ ISHSDGKHMH PSVAVDKPVD DGYNWRKYGQ KPIKGSEYPR 240 SYYKCTHLNC LVKKKVERSS DGQVAQIIYK NEHNHEKPQL GRRAKDGSDA NENTNSQTKP 300 ELFMHSQIAQ VHSVPESNKE SSQAAPIQLP ESSDSEEVGD ADNRKEGDDE PNPKRRQVQN 360 LNVAGEVEVT VSHKTVTEPK IIVQTRSEVD LLDDGYRWRK YGQKVVKGNP HPRSYYKCTN 420 PGCNVRKHVE RAPTDSKAVI TTYEGKHNHD VPASKNSSHS TANNTASQLK PNKVVTRKHP 480 LLKEMDFGNN NQRPVLLRLK EEQIIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-40 | 219 | 453 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-40 | 219 | 453 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM434350 | 4e-42 | AM434350.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X178339.3, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006482724.1 | 0.0 | probable WRKY transcription factor 4 isoform X1 | ||||
Swissprot | Q9XI90 | 1e-142 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A067FZC2 | 0.0 | A0A067FZC2_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PKB4 | 0.0 | A0A2H5PKB4_CITUN; Uncharacterized protein | ||||
STRING | XP_006482724.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006431265.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1534 | 27 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-131 | WRKY DNA-binding protein 4 |
Publications ? help Back to Top | |||
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