PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_42_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 534aa    MW: 55985 Da    PI: 8.6637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_42_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056183123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Neem_42_f_3 61 FVCEICNKGFQRDQNLQLHRRGH 83
                 89*******************88 PP
2zf-C2H214.30.00012137159123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s++k H +++
  Neem_42_f_3 137 WKCEKCSKKYAVQSDFKAHAKVC 159
                  58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.62E-76083No hitNo description
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PfamPF121718.6E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355260102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4125157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.62E-7132157No hitNo description
SMARTSM0035576137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MPVDLENSST ASGEASVSFS SKKKAPPKTT IKKKRSLPGT PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPETSCV HHEPSRALGD  120
LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DFKAHAKVCG TKEYKCDCGS KFSRKFAGDF  180
SRLSMLSYLI PSRRDSFITH RAFCDMLTKE GARAPPNQDE GLVDTDSDSD PKVQPVDLSS  240
PNPPPAAAPA PAPAAPPPAV PQASDAISSS VSPVQTRDAE MAENSPQVVE EAAPTAGLNG  300
SCSSSSSSSS GCKSNTVFAS LFASSTASGT FKPSQTLALD LMRAMARPDL PTDGASSSSM  360
EPFALCLATA GSSIFGTSGQ ERRQYGTQCQ AAMSATALLQ KAAQMGATTS NSSLLCGLGL  420
VTSSSSSAQQ DRVPWGNNRP IDSENATVPA GLGLGLHCDG SSGLKELIMG TPSVFGPKQP  480
TLDFLGLGMA ASGATPSNGI STHKGGGRDM AATAAPFEGK GGEEIAGNDA SSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-29133213364Zinc finger protein JACKDAW
5b3h_F3e-29133213364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425718.10.0protein indeterminate-domain 2
RefseqXP_006466759.10.0protein indeterminate-domain 2
RefseqXP_006466760.10.0protein indeterminate-domain 2
RefseqXP_006466761.10.0protein indeterminate-domain 2
RefseqXP_024036000.10.0protein indeterminate-domain 2
RefseqXP_024036001.10.0protein indeterminate-domain 2
SwissprotQ9LVQ71e-164IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLV4RVX70.0V4RVX7_9ROSI; Uncharacterized protein
STRINGXP_006466759.10.0(Citrus sinensis)
STRINGXP_006425718.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-143C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]