PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_4299_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 25077.3 Da PI: 9.1461 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.3 | 3.7e-10 | 60 | 110 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++h +E++RR+++ + + Lr+llP ++K s ++ Av+Y+k+L Neem_4299_f_4 60 KMTHRDIEKQRRQEMSTLHASLRSLLPLeY---IKGKRSMSDHMNGAVNYVKDL 110 789*************************77...*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-12 | 58 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.976 | 58 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.52E-9 | 58 | 115 | No hit | No description |
Pfam | PF00010 | 1.6E-7 | 60 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-10 | 60 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MAGEQLSSNP SQQNIIRQNR VLAHNSMDDS SHNKSTRQSQ WRNLSVSGNN ENTSNNHKNK 60 MTHRDIEKQR RQEMSTLHAS LRSLLPLEYI KGKRSMSDHM NGAVNYVKDL KNKIEELNGK 120 RDELKKQSDL SVSDDGTGSS NTTLPSHVLI HPCLGGLEVV ISSSFREQVF PVSRVLEVLL 180 KEGLDVVSCV STKVNQMLLL TIHIEPPTES SRSDSMIVYT MPR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024948035.1 | 2e-70 | transcription factor bHLH120-like | ||||
TrEMBL | V4S852 | 6e-69 | V4S852_9ROSI; Uncharacterized protein | ||||
STRING | XP_006490458.1 | 1e-69 | (Citrus sinensis) | ||||
STRING | XP_006421795.1 | 1e-69 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51790.1 | 6e-45 | bHLH family protein |