PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4257_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 294aa    MW: 33741.1 Da    PI: 5.331
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4257_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.54.1e-2429122186
       trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rWt+qe+ +Li++++ +e+r+++ +         ++p+W+ v+++++++g++r+p+qC+++w+nl +++kkik++e + ++e++s + + ++l+
  Neem_4257_f_2  29 RWTRQETIVLIQGKKVVENRIQECCgmitigsePNEPKWDLVASYCKQHGVNRGPVQCQKRWSNLLGDFKKIKTWELQVKEEVESFWLMRNDLR 122
                    8*********************95444555555*********************************************9999999998888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9462294IPR017877Myb-like domain
SuperFamilySSF466896.16E-52796IPR009057Homeodomain-like
CDDcd122032.17E-1428101No hitNo description
PfamPF138371.7E-1328118No hitNo description
Gene3DG3DSA:1.10.10.602.5E-52994IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAVFCQANPN REQALDGIDD STKTARHPRW TRQETIVLIQ GKKVVENRIQ ECCGMITIGS  60
EPNEPKWDLV ASYCKQHGVN RGPVQCQKRW SNLLGDFKKI KTWELQVKEE VESFWLMRND  120
LRKEMKLPSV FDREVYDVLD GVFAVPAIPF TLVTTTADGK SRVLHEIMAM NEEEEEEAVF  180
DSIRNTTEDE GLFSVYEPSG QEENGNPEKG TTARESSTKT VATPLHISDT VKEKHRGATQ  240
STSQERWKRR RLSLHVSKDI TMEDQLIKVL ERNMSMLNAQ LEVQNINCQL ERSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247251KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436955.11e-104trihelix transcription factor ASR3
TrEMBLA0A2H5PHL31e-106A0A2H5PHL3_CITUN; Uncharacterized protein
STRINGXP_006485172.11e-107(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-74Trihelix family protein