PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_41780_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 278aa MW: 31045.8 Da PI: 9.8405

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_41780_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.9e-05	105	127	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs++ L H++ H Neem_41780_f_1 105 FSCSFCNKNFSTSQALGGHQNAH 127 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.0E-5	100	131	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.55E-7	101	132	No hit	No description
PROSITE profile	PS50157	12.113	105	132	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	107	127	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MATSESSSIS ATSQDISPNK DKIITLVKEK FGEEEEEVVE RLKPRKSKSD LNLLFNQKQK 60 IAADDSVSES HEVELKLFSM GTSSQANQSS SHASIRKKQS GRRGFSCSFC NKNFSTSQAL 120 GGHQNAHKQE RALAKRRKEM DMGGGLGHHN FPYYPRKEMD MGGGLGHHNF PYYPYSSISQ 180 IPNFYGSFNR PPLGISMQSM IRKPSYPWIP LRDRFANGKT VMNNNAQVAY DKLRLESVFQ 240 QAQNGSDFQS FNGGGDTLKG KNPLLHQDDS GLDLSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006421473.2	3e-85	zinc finger protein 3
TrEMBL	A0A067ETN7	1e-83	A0A067ETN7_CITSI; Uncharacterized protein
STRING	XP_006421473.1	1e-71	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8738	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	8e-17	C2H2 family protein