PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_41513_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 189aa MW: 21141.1 Da PI: 9.1811 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.8 | 5.2e-22 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++++ rqvtfskRrng++KKA+EL +LC+a+va+++fs+ gk Neem_41513_f_1 10 MVKDSNSRQVTFSKRRNGLFKKANELATLCAAQVAIVVFSPGGK 53 5789999**********************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.59 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.11E-28 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.42E-34 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 1.4E-20 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-25 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-20 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-20 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 189 aa Download sequence Send to blast |
MGRRKIEMKM VKDSNSRQVT FSKRRNGLFK KANELATLCA AQVAIVVFSP GGKPFSFGHP 60 SVDSVAQRFL NQDSGKNPAE AYDHVDPRQQ ARVEKLSQQL TDLLQELHVE KKRGEALDKD 120 IKANAMFRNK KSINDLNLDE LLKMKASLEV LRENLKGLVN EMEASASLLL LKQGTGEDDD 180 DQQLGSCQI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-14 | 1 | 86 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 1e-14 | 1 | 86 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 1e-14 | 1 | 86 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 1e-14 | 1 | 86 | 1 | 83 | MEF2 CHIMERA |
6bz1_A | 1e-14 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 1e-14 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 1e-14 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 1e-14 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006468192.2 | 6e-82 | agamous-like MADS-box protein AGL29 | ||||
Swissprot | O64703 | 4e-50 | AGL29_ARATH; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A067GET8 | 5e-81 | A0A067GET8_CITSI; Uncharacterized protein | ||||
STRING | XP_006468192.1 | 9e-82 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-52 | AGAMOUS-like 29 |
Publications ? help Back to Top | |||
---|---|---|---|
|