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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4148_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 460aa MW: 49744.5 Da PI: 5.0703 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.5e-31 | 241 | 299 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Neem_4148_f_2 241 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 299 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.0E-31 | 234 | 301 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.109 | 235 | 301 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-26 | 238 | 301 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 240 | 300 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.9E-26 | 242 | 299 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MENYQGDLTD IVRASAGQVG CNSNSASAAA SDVNNPSPNW QFPSSDPLNF ASSIHDDQRD 60 SFFGDPFCNM RDPLLHEFNM SGSTYYNPPN SADILRTSVD EVAGNSFCGG NASSILRHQR 120 VFDDDLKSPC NIFSRIQISS SQSPKLQQSQ PPLSPCDSPV MAAATAAAAS PRGIKTPAMV 180 ASDMINANSS KSCLVDNSGP VQISSPRNLG IKRRKSQAKK VVCIPAPAAA NSRSSGEVVP 240 SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW 300 PTQRNALAGS TRSQPSKNNA ASKSSPSSQP QNTTNNAKEE GKESSNDTMS SPTTIVGPSS 360 SASVKEEIED IDKSIEMEDA EFSEGFSQIY KPALPDSNQS EDFFADLGEI EADPLNLLFS 420 QEFSADHEQK ESKGLDPFSI FDWSGDNNSN SSFGETKRGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-25 | 215 | 302 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 5e-25 | 215 | 302 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00171 | DAP | Transfer from AT1G30650 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC485301 | 2e-43 | KC485301.1 Jatropha curcas WRKY transcription factor 49 (WRKY49) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021637737.1 | 0.0 | probable WRKY transcription factor 14 | ||||
TrEMBL | A0A2H5N2M9 | 0.0 | A0A2H5N2M9_CITUN; Uncharacterized protein | ||||
STRING | cassava4.1_030132m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30650.1 | 4e-94 | WRKY DNA-binding protein 14 |