PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Neem_4121_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 284aa MW: 31579 Da PI: 5.818

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_4121_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.3	2.5e-11	147	194	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ l Neem_4121_f_1 147 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 194 8999*********************************99998776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-14	143	207	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.714	145	208	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-11	147	201	No hit	No description
Pfam	PF00170	6.2E-10	147	191	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.9E-12	147	199	No hit	No description
CDD	cd14703	2.19E-23	148	198	No hit	No description
PROSITE pattern	PS00036	0	150	165	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MTINGPNNQP SWVDEFLDFS SVRRGAHRRS ISDSIAFLDP PSLVEDCRNS NAINSMPETN 60 GFDRLDDEQL MSMFSDDISV AVPLTASSSN PSTPSDQNSN NDEKTTPLDQ QQQPKNEPGE 120 VESSCKNGPQ TTQPPPASNS DTVIDPKRVK RILANRQSAQ RSRVRKLQYI SELERSVTTL 180 QTEVSALSPR VAFLDHQRLV LNVDNSALKQ RIAALAQDKI FKDAHQDALK KEIERLRQVY 240 RQQNLKKMNN NNNAAPPLAS AAPTQQPMNT DAIGCTDKDQ QLLS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007021637.2	1e-140	PREDICTED: basic leucine zipper 34
Swissprot	Q9M2K4	2e-99	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A061F923	1e-138	A0A061F923_THECC; Basic-leucine zipper transcription factor family protein
STRING	EOY13162	1e-139	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-100	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]