PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_41110_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WRKY

Protein Properties

Length: 283aa MW: 32240.6 Da PI: 5.1437

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_41110_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.1	5e-30	70	128	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d +v++itY+++Hnh+ Neem_41110_f_1 70 SDLWSWRKYGQKPIKGSPHPRGYYRCSTSkGCSAKKQVERCRTDASVLIITYTSTHNHP 128 699*********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-31	63	130	IPR003657	WRKY domain
SuperFamily	SSF118290	7.19E-26	67	130	IPR003657	WRKY domain
SMART	SM00774	1.3E-35	69	129	IPR003657	WRKY domain
PROSITE profile	PS50811	30.963	70	130	IPR003657	WRKY domain
Pfam	PF03106	2.5E-25	71	128	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MAYATAGKKR FHHTSPEIRS ERSEFTQPEE VAELNPETQA SKRRKVVEKT VVRVRIGENA 60 GKLKNEGPPS DLWSWRKYGQ KPIKGSPHPR GYYRCSTSKG CSAKKQVERC RTDASVLIIT 120 YTSTHNHPCP DLQNINLTKQ SKESAQTQAT ETEEDHPTSS KQQEETQSQE EEKQNQSIMN 180 MTTSDEDVSK DHFHYLQSPI SCTQDIMINQ EDPFSGNLEK THESLNLLLD EEPLSYQNLM 240 TFSTPKSEEN DFFDELEELP TSSVFTSFMR SSLFDEGIPV VPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-20	70	130	17	79	Disease resistance protein RRS1
5w3x_D	1e-20	70	130	17	79	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF708969	4e-38	JF708969.1 Dimocarpus longan WRKY transcription factor 3-1 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006492342.1	1e-131	probable WRKY transcription factor 65
TrEMBL	A0A067HGC0	1e-130	A0A067HGC0_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NXI6	1e-130	A0A2H5NXI6_CITUN; Uncharacterized protein
STRING	XP_006492342.1	1e-131	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15371	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	9e-34	WRKY DNA-binding protein 35