PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_40209_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

TALE

Protein Properties

Length: 157aa MW: 18203.6 Da PI: 7.6653

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_40209_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.9	2.2e-10	80	115	20	55
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps+++++ L++++gL+ +q+ +WF N+R ++ Neem_40209_f_1 80 YKWPYPSESQKQALSASTGLDSKQINNWFINQRKRH 115 4679*****************************985 PP
2	ELK	40.1	7.7e-14	35	56	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlr Ysg++gsLkqEF+ Neem_40209_f_1 35 ELKGQLLRRYSGCIGSLKQEFM 56 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03789	2.0E-11	35	56	IPR005539	ELK domain
PROSITE profile	PS51213	10.196	35	55	IPR005539	ELK domain
SMART	SM01188	7.2E-8	35	56	IPR005539	ELK domain
PROSITE profile	PS50071	12.584	55	118	IPR001356	Homeobox domain
SMART	SM00389	1.0E-12	57	122	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-20	57	128	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-28	60	120	IPR009057	Homeodomain-like
CDD	cd00086	1.90E-12	67	119	No hit	No description
Pfam	PF05920	2.4E-17	75	114	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MLPSAPGEAF DRNGSSEEDL DVNIDFIDPQ AEDQELKGQL LRRYSGCIGS LKQEFMKKRK 60 KGKLPKEARQ QLLDWWNKHY KWPYPSESQK QALSASTGLD SKQINNWFIN QRKRHWKPSE 120 DMHFMVMDAA AANQPHYYMD NVLGNSFPVD LSSMPLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	59	LKQEFMKKRK
2	56	60	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021889118.1	4e-83	homeobox protein SBH1
Swissprot	O22299	1e-74	LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBL	D3IWE9	8e-79	D3IWE9_PRUPE; Class I KNOX homeobox transcription factor STM-like 2
STRING	evm.model.supercontig_152.56	2e-83	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6473	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	2e-71	KNOX/ELK homeobox transcription factor