PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_39829_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 325aa MW: 36221 Da PI: 5.4758 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.2 | 1.7e-33 | 137 | 194 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsY++Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k Neem_39829_f_1 137 EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK 194 7****************************************.***************85 PP | |||||||
2 | WRKY | 35.6 | 1.9e-11 | 304 | 325 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vkg+++pr Neem_39829_f_1 304 LDDGYRWRKYGQKVVKGNPNPR 325 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-28 | 125 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-25 | 131 | 195 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.009 | 131 | 195 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-36 | 136 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-25 | 137 | 193 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-13 | 289 | 325 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-9 | 296 | 325 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.386 | 299 | 325 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-7 | 305 | 325 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MILASPTTDA VNWNNNQQQN NKGEENNFFD FSFQTSQTRA SATASSSSNF LQSSSNIVSV 60 EESVKRQQEP WNFNKPTKQS DFSTENAGVK SEFAPIQSFS LEMGGYQTNA QTSAAPQSDY 120 SQHNQSTMYS REQKRSEDGY NWRKYGQKQV KGSENPRSYF KCTFPDCPMK KKVERSLDGQ 180 ITEIVYKGSH NHPKPQSTRR SSSSQSTQHA TCANSDLSDQ SAGPISNPQT ESFSMQGDSS 240 TSFGEDDFDQ GSPTSNPGGD DNENEPDAKR WKGENDIDGV IGTGSRTVRE PRIVVQTTSD 300 IDILDDGYRW RKYGQKVVKG NPNPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-16 | 138 | 195 | 16 | 74 | WRKY transcription factor 1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006429505.1 | 1e-175 | probable WRKY transcription factor 33 isoform X1 | ||||
Refseq | XP_006481125.1 | 1e-175 | probable WRKY transcription factor 33 isoform X1 | ||||
TrEMBL | A0A2H5MWH9 | 1e-174 | A0A2H5MWH9_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SUS1 | 1e-174 | V4SUS1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006481125.1 | 1e-175 | (Citrus sinensis) | ||||
STRING | XP_006429505.1 | 1e-175 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4583 | 27 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 2e-82 | WRKY DNA-binding protein 33 |