PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_39823_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bZIP | ||||||||
Protein Properties | Length: 237aa MW: 26727.7 Da PI: 8.3941 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 20.5 | 1e-06 | 159 | 217 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR++A r ++Kk ++ Le +L+++ ++L+ +l l+ e+++l +e+ Neem_39823_f_1 159 KRAKRIVTNRLSAIRAKEKKKLYMYMLEHNLHSLQSKSTKLAARLTLLQTESKSLNAEN 217 9******************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-4 | 155 | 219 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.255 | 157 | 220 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 5.6E-6 | 157 | 209 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.4E-6 | 159 | 209 | No hit | No description |
SuperFamily | SSF57959 | 8.26E-8 | 159 | 213 | No hit | No description |
CDD | cd14703 | 4.98E-16 | 160 | 209 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDKGKKPIDD QQEEEDFLSL DADYYYYDPT MILSPAALAQ PEFSVILSEG SGSGKQPTLV 60 DEMEAAKEDF FTKFLNMNFA GQSSPKMNQQ DSMLTFSKAA DLQIFGADNK TPAPPVVPER 120 YTMPPQAPLP ASEANGKSIV FRKTMPPHVL AEVALYDPKR AKRIVTNRLS AIRAKEKKKL 180 YMYMLEHNLH SLQSKSTKLA ARLTLLQTES KSLNAENNIL RDRMHIMSKQ LHLQDCK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024046668.1 | 8e-56 | probable transcription factor PosF21 | ||||
TrEMBL | A0A2H5PV10 | 1e-54 | A0A2H5PV10_CITUN; Uncharacterized protein | ||||
STRING | XP_006447900.1 | 4e-48 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM23078 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31370.6 | 2e-25 | bZIP family protein |