PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_39665_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 308aa MW: 35097.8 Da PI: 5.882

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_39665_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	345	1.2e-105	1	286	88	373
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 +Pi+kf h+taN+ +l+a+eg++rvHiiDfdi+qGlQWp+++q+LasR+++p ++RiTg+g+ sk+el+etg+rL+ fAe+l++pfef++ v Neem_39665_f_1 1 TPIPKFIHFTANEILLRAFEGKDRVHIIDFDIKQGLQWPSFFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLSGFAEALNLPFEFHP-V 90 7***********************************************************....***********************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++rled++l++L+vk++E++aVn+++qlh++l +++ + +++L l++s++P+vv ++eqea+hns+ F +r++++l+yysalfd ++ +lp Neem_39665_f_1 91 VDRLEDVRLWMLHVKEKENVAVNCIFQLHKTLY-TGNGG-ALRDFLGLIRSTNPTVVLMAEQEAEHNSPFFETRVSNSLRYYSALFDLMDYSLPL 183 ***************************93.33333.4789*********************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee........sgslvlgWkd 364 +s +rik+E+ ++rei+++vaceg++r erhe++ +Wr+++e+ GF+ v ++e+++ q ++ll++++ + y v+++ ++l+l W d Neem_39665_f_1 184 DSPARIKIEEL-FAREIRSIVACEGSDRLERHESFDNWRKMMEQGGFRCVGIREREVLQSQMLLKMYSCENYGVKKQqqgqqdgeGAALTLSWLD 277 *****98.****************************************************88899776777777455667*** PP GRAS 365 rpLvsvSaW 373 +pL++vS W Neem_39665_f_1 278 QPLYTVSGW 286 ******* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.2E-103	1	286	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	50.542	1	259	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
TPIPKFIHFT ANEILLRAFE GKDRVHIIDF DIKQGLQWPS FFQSLASRTN PPSHVRITGI 60 GESKQELNET GDRLSGFAEA LNLPFEFHPV VDRLEDVRLW MLHVKEKENV AVNCIFQLHK 120 TLYTGNGGAL RDFLGLIRST NPTVVLMAEQ EAEHNSPFFE TRVSNSLRYY SALFDLMDYS 180 LPLDSPARIK IEELFAREIR SIVACEGSDR LERHESFDNW RKMMEQGGFR CVGIREREVL 240 QSQMLLKMYS CENYGVKKQQ QGQQDGEGAA LTLSWLDQPL YTVSGWAPVD VAGSSSSFSQ 300 PNKIFQSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-59	1	288	106	380	Protein SCARECROW
5b3h_A	7e-59	1	288	105	379	Protein SCARECROW
5b3h_D	7e-59	1	288	105	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006477403.1	0.0	scarecrow-like protein 28
Swissprot	Q9CAN3	1e-146	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A067F839	0.0	A0A067F839_CITSI; Uncharacterized protein
STRING	XP_006477403.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7296	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	1e-147	GRAS family protein