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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_39575_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | AP2 | ||||||||
Protein Properties | Length: 295aa MW: 33572.1 Da PI: 9.124 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 13 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Neem_39575_f_1 13 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHAAARAYDRAAIKFRG 62 78*******************......44************************997 PP | |||||||
2 | AP2 | 41.8 | 2.7e-13 | 105 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g Neem_39575_f_1 105 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDRAAVKCNG 155 89********.7******5553..2.26**********99*********988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.09E-16 | 13 | 71 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.5E-10 | 13 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.13E-11 | 14 | 69 | No hit | No description |
SMART | SM00380 | 5.4E-31 | 14 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.031 | 14 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-18 | 14 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-17 | 105 | 165 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.44E-24 | 105 | 165 | No hit | No description |
Pfam | PF00847 | 4.6E-9 | 105 | 154 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-31 | 106 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-16 | 106 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.343 | 106 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 145 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDSGKQVYL GGFDTAHAAA RAYDRAAIKF 60 RGVEADINFS LEDYEDDLKQ MSNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA 120 RMGQFLGKKY VYLGLFDSEI EAARAYDRAA VKCNGKDAVT NFDPSLYEDE LNASGNPASD 180 HNLDLSLGSS ASNQSSLDLL NRRANAGTDT PSASFAFEAD WRTSGFSPKQ ETHRSETETQ 240 QLLSQIHLQS PGSLKFSEMQ RYEQYRRPEE NHMLQMLPPH YNSSNYQVGI ANHVN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU883665 | 3e-60 | EU883665.1 Poncirus trifoliata transcription factor APETALA2 (AP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010652782.1 | 1e-143 | PREDICTED: transcription factor APETALA2 isoform X1 | ||||
Swissprot | P47927 | 1e-108 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | F6H4H7 | 1e-141 | F6H4H7_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0031g00220.t01 | 1e-142 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-105 | AP2 family protein |