PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3931_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 709aa    MW: 77650 Da    PI: 6.9143
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3931_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-094104471954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Neem_3931_f_1 410 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 447
                    564459******************************88 PP
2BELL120.47.9e-39274345172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    +rqelq+kkakL+s+l+eV++rYkqy++q+q v+s+Fe+vag gsak+Yt+lAl++iS++FrcLkdai+ qi
  Neem_3931_f_1 274 QRQELQIKKAKLVSMLDEVEQRYKQYHHQMQLVVSAFEQVAGFGSAKSYTALALRTISKQFRCLKDAISLQI 345
                    69*******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-60201343IPR006563POX domain
PfamPF075266.9E-49207342IPR006563POX domain
PROSITE profilePS5007112.017388451IPR001356Homeobox domain
CDDcd000864.90E-12391452No hitNo description
SMARTSM003895.1E-9391455IPR001356Homeobox domain
SuperFamilySSF466898.55E-17392457IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28394457IPR009057Homeodomain-like
PfamPF059202.9E-18408447IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MATYFHVNSE IQGADGMQTL YLMNPSYVPY SDTSSLPNNA LLLNPVSLAH APPPSNDHHP  60
LVGIPLPAPS NNTDQTNNSE DINRSSCLQA IVPGVHYDLW SSNIDQNSGQ SHPQMVSLAA  120
AASNSNQLGL LRHLASSSCR QQGLSLSLSP QQAAVGYNRP ISIEGDHPEG RGQLTVSTSC  180
DLMRVSENSP SSVSVVSNGI SSMQSAILGS KYLRAAQELL DEVVKVGNVI KPDSIEDTKE  240
SMKFSRESNL VATGEESNGG ESSTKPTAEL TTAQRQELQI KKAKLVSMLD EVEQRYKQYH  300
HQMQLVVSAF EQVAGFGSAK SYTALALRTI SKQFRCLKDA ISLQIKATTK KLGEDDCMGA  360
KAEGSRLRYV DHQLRQQRAL QQLGMIQHHA WRPQRGLPER AVTVLRAWLF EHFLHPYPKD  420
SDKHMLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYLEE IKEQERNGSD NAIENNVTES  480
KDPGSNAAFS QESKQKNALG EKSTKQITSP AELSNSTIST SPMGRTLQAQ TGFNLIGPSD  540
HIEGIVQRRQ KKLRNTEVQH SLSSILPRDV DMKQGETSRD IGLKFLGRET LSKDGYPLIN  600
NSGGFGAYSM GPDIGRFNPD HQLAATPFHG NGVSLTLGLP HCENLSLSGT QQNLLSGAQL  660
GRGLELGSGE PDFCGIETPQ PSHSSTGYDS IDIDNRKRFA AQLLPDFVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16397455563Homeobox protein Meis2
3k2a_B2e-16397455563Homeobox protein Meis2
4xrs_A2e-16397454158Homeobox protein Meis1
4xrs_B2e-16397454158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275098.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLF6HAC50.0F6HAC5_VITVI; Uncharacterized protein
STRINGVIT_06s0009g00410.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16274513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-114BEL1-like homeodomain 1