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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_39204_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bZIP | ||||||||
Protein Properties | Length: 160aa MW: 18254.5 Da PI: 8.4883 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38 | 3.6e-12 | 32 | 83 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 ++ +r+q+NRe+ArrsR RK++ ++ L+ v +L + N + ++ ++++ Neem_39204_f_1 32 RKRKRMQSNRESARRSRMRKQKHLDDLTAQVTQLRKDNNQILTSINITTQQY 83 6789**********************************99988887777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.4E-18 | 28 | 92 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.749 | 30 | 93 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-10 | 31 | 107 | No hit | No description |
SuperFamily | SSF57959 | 2.56E-12 | 32 | 85 | No hit | No description |
Pfam | PF00170 | 7.4E-10 | 32 | 89 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.78E-19 | 33 | 84 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 35 | 50 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MASSSGSGNS SGSTQLQNSG SEENLQLVMD QRKRKRMQSN RESARRSRMR KQKHLDDLTA 60 QVTQLRKDNN QILTSINITT QQYMNIENEN SILRAQLMEL SQRLESLNEI LNFINPSKGI 120 FESDHHQGGI NTICDGFMNP MNIVYLNQPI MASPAEMFQY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 52 | RKRKRMQSNRESARRSRMRKQK |
2 | 44 | 51 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011048821.1 | 1e-77 | PREDICTED: ocs element-binding factor 1-like | ||||
Swissprot | C0Z2L5 | 5e-56 | BZP44_ARATH; bZIP transcription factor 44 | ||||
TrEMBL | B9H4F3 | 5e-76 | B9H4F3_POPTR; BZIP family protein | ||||
STRING | POPTR_0005s25290.1 | 9e-77 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM501 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 6e-53 | basic leucine-zipper 44 |
Publications ? help Back to Top | |||
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