PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3903_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 19320.8 Da PI: 9.6416 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 32 | 82 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+Wv+eIr+p++ ++r++lg+f t+e+Aa+a++ a +l+g Neem_3903_f_2 32 PKYRGVRRRQ-WGKWVSEIREPRK---KTRIWLGSFETPEMAARAYDVASYCLKG 82 79*****887.**********843...6**********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-13 | 32 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-30 | 32 | 91 | No hit | No description |
SuperFamily | SSF54171 | 3.53E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.026 | 33 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-31 | 33 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-35 | 33 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MKRKGYNDYN YSMSMRSSER VMQQRNKTAR HPKYRGVRRR QWGKWVSEIR EPRKKTRIWL 60 GSFETPEMAA RAYDVASYCL KGNKGLLNFP EEIDQLPRPR TSTANDIRAA AVAAAATPAT 120 NLKASTEFKE LSSNGGDDFW SEIELPELNF DAGNWTCCGD NIMWVDAAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 25 | 94 | 6 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00120 | DAP | Transfer from AT1G01250 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494833.1 | 7e-56 | ethylene-responsive transcription factor ERF023-like | ||||
Swissprot | Q1ECI2 | 4e-48 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A1S2XW41 | 2e-54 | A0A1S2XW41_CICAR; ethylene-responsive transcription factor ERF023-like | ||||
STRING | XP_004494833.1 | 3e-55 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7659 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 2e-46 | ERF family protein |
Publications ? help Back to Top | |||
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