PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_38_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C2H2 | ||||||||
Protein Properties | Length: 247aa MW: 26559.7 Da PI: 8.5023 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k Fs+ L H +H Neem_38_f_3 106 FKCSVCNKAFSSYQALGGHKASH 128 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.52E-10 | 105 | 177 | No hit | No description |
Pfam | PF13912 | 1.4E-13 | 106 | 130 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.18 | 106 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.1E-13 | 155 | 179 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 155 | 177 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.764 | 155 | 184 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 157 | 177 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MALEALNSPT TSTPPFRFEE TNLHCLEPWT KRKRSKRPHN PPTEEEYLAL CLVMLARGTT 60 STSASATPPP APPSDQKLNT TTTTALHRQK SATPPPAPPS DQKLIFKCSV CNKAFSSYQA 120 LGGHKASHRK GSGGDEQSTS TTTTTATPNT AGRSHECSIC HKSFPTGQAL GGHKRCHYDG 180 GEKSGVTSSE GVGSSNTHSQ VSHRDFDLNL PVLPEFSPAF FISGDDEVES PLPAKKPRLF 240 LPPKIEV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024952513.1 | 1e-109 | LOW QUALITY PROTEIN: zinc finger protein ZAT10 | ||||
Swissprot | Q96289 | 1e-67 | ZAT10_ARATH; Zinc finger protein ZAT10 | ||||
TrEMBL | A0A067H1D3 | 1e-120 | A0A067H1D3_CITSI; Uncharacterized protein | ||||
TrEMBL | V4T600 | 1e-120 | V4T600_9ROSI; Uncharacterized protein | ||||
STRING | XP_006433625.1 | 1e-121 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 2e-62 | salt tolerance zinc finger |