PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_38_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 377aa    MW: 41840.1 Da    PI: 4.8612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_38_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-103033431055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Neem_38_f_1 303 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 343
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-14293358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.015293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-12298352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-12302347No hitNo description
PfamPF000105.4E-8303343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEPFGVFADG EWENFSKMFS TEEFDFAQQF LGHCNSFPPQ HDDQGLHFIT QSNFFPTSES  60
NICMAGVNEN LFYSSNTNSN LQNLSQDSFG SNNCTSSLFI PTSTHEAAYF FSDSNQTPLT  120
NDASMSMDTC VMDEKKIGLR GTAFPDISME ETPVNQYVSG EKSDNFENGQ LATGVVQAKE  180
LQLKRKFDVP ALHTGEDDKV NVNSPENTKK KPRLSRYVQK TNKKNEHSKK NQNLSPRGND  240
GEESNAGSDG QSSSSYSSEE DNASQETNGG ATSDSKASLA LNLNGKPRAS RGSATDPQSI  300
YARKRRERIN ERLKILQNLV PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPI  360
AYNGIDVCLS QKISSLL
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023915564.11e-137transcription factor bHLH84-like
SwissprotQ84WK02e-56BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A2N9EM481e-127A0A2N9EM48_FAGSY; Uncharacterized protein
STRINGXP_006472983.11e-130(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2002446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]