PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_38249_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 466aa MW: 54369.3 Da PI: 8.414

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_38249_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.5	1.3e-26	218	302	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ e++aLi +r+ +e+++ + +k W+e+s mr+ g+ rs+k+Ckekwen+nk+++k e+ kk+ e+s++cpyf++le Neem_38249_f_1 218 RWPEAEIQALIMLRTTLEHKFHVTGSKCSIWDEISVGMRDMGYDRSAKKCKEKWENMNKYFRKSMENGKKH-VEKSKSCPYFHDLE 302 8******************************************************************99.678889****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0045	215	277	IPR001005	SANT/Myb domain
Pfam	PF13837	1.1E-18	217	302	No hit	No description
CDD	cd12203	1.37E-24	217	281	No hit	No description
PROSITE profile	PS50090	6.713	218	275	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
PPQKLRPIRR SPTEDRPSFL GKQMCGVTGE SGVCFCNGYK GRKAAENGVG SSSSDNDHKD 60 LLSVFSSSSD NNHEDLLTET EGPRNQKRKR KAREKIESYL ESMVMKIMEK QEQMNRELIE 120 MIERRERERI IREEAWKQQE MERTKRDEEI RARETDRSIA LITFIQSVLG QEIQVPQALP 180 VSCMEEDGGR DGRNHTKNNI MCKENNRRCQ EASDPNKRWP EAEIQALIML RTTLEHKFHV 240 TGSKCSIWDE ISVGMRDMGY DRSAKKCKEK WENMNKYFRK SMENGKKHVE KSKSCPYFHD 300 LEVLYRNGLI NPGNVSNFPN FENVSESDAS NTNHETATKT ENKSMNCKYY TSLDQHHHHH 360 KNKTSDWKND RNSPIIIDPI PVIDKHAVIS LLSIRSKREI DKNGDQNCGE DEKNIYQNCI 420 FSFHLLKIFS GKYTILDQEE KRARVQFEDG KWRLPWLPPA PPFKLW

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

PPQKLRPIRR SPTEDRPSFL GKQMCGVTGE SGVCFCNGYK GRKAAENGVG SSSSDNDHKD  60
LLSVFSSSSD NNHEDLLTET EGPRNQKRKR KAREKIESYL ESMVMKIMEK QEQMNRELIE  120
MIERRERERI IREEAWKQQE MERTKRDEEI RARETDRSIA LITFIQSVLG QEIQVPQALP  180
VSCMEEDGGR DGRNHTKNNI MCKENNRRCQ EASDPNKRWP EAEIQALIML RTTLEHKFHV  240
TGSKCSIWDE ISVGMRDMGY DRSAKKCKEK WENMNKYFRK SMENGKKHVE KSKSCPYFHD  300
LEVLYRNGLI NPGNVSNFPN FENVSESDAS NTNHETATKT ENKSMNCKYY TSLDQHHHHH  360
KNKTSDWKND RNSPIIIDPI PVIDKHAVIS LLSIRSKREI DKNGDQNCGE DEKNIYQNCI  420
FSFHLLKIFS GKYTILDQEE KRARVQFEDG KWRLPWLPPA PPFKLW

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00552	DAP	Transfer from AT5G47660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467269.1	1e-136	trihelix transcription factor GTL1
Refseq	XP_006467270.1	1e-136	trihelix transcription factor GTL1
TrEMBL	A0A067GG05	1e-135	A0A067GG05_CITSI; Uncharacterized protein
STRING	XP_006467269.1	1e-136	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9411	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	1e-43	Trihelix family protein