PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_38209_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 255aa    MW: 28630.9 Da    PI: 4.7815
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_38209_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603.1e-19174207134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+C+t kTp+WR gp g+ktLCnaCG++y++ +
  Neem_38209_f_1 174 CSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGR 207
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-13168218IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15171231No hitNo description
Gene3DG3DSA:3.30.50.103.2E-15172205IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.622172204IPR000679Zinc finger, GATA-type
CDDcd002023.07E-15173224No hitNo description
PROSITE patternPS003440174199IPR000679Zinc finger, GATA-type
PfamPF003206.9E-17174207IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEFCMEARAL KSRLRRELSF IKSTQQVFLE DILCGTGISA VSTEDFSVDD LLDFSNGDFE  60
DGSAEEEDEN EKDSVSVSSS RDRVDDDNNS NSASFSSDQT LLVDDFAELE WVSQFVDDSS  120
CSEFSLLYPN YAKTLSEPAE KPVLVNTSCF NEPAAKKAKK KPTVQGGGLF QRRCSHCQTQ  180
KTPQWRTGPL GPKTLCNACG VRYKSGRLFP EYRPACSPTF SVDMHSNSHR KVLEMRKKKE  240
MTEPEVGMTR MVQSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236855.12e-88PREDICTED: GATA transcription factor 5-like
RefseqXP_008236856.12e-88PREDICTED: GATA transcription factor 5-like
TrEMBLA0A314Y1V45e-83A0A314Y1V4_PRUYE; GATA transcription factor
STRINGXP_008236855.16e-88(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.23e-47GATA transcription factor 3