PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3772_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 314aa    MW: 34224.5 Da    PI: 7.9979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3772_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-1259103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
    Neem_3772_f_2  59 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 103
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.07E-1653109IPR009057Homeodomain-like
PROSITE profilePS5129414.1854108IPR017930Myb domain
TIGRFAMsTIGR015571.5E-1857106IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.5E-657109IPR009057Homeodomain-like
SMARTSM007176.5E-1058106IPR001005SANT/Myb domain
PfamPF002494.6E-1059103IPR001005SANT/Myb domain
CDDcd001671.19E-761104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MVSKNPNPAE GFYLDPSGMA LPGLGPFGTS ATAAVTSAVS TSEDPNKKIR KPYTITKSRE  60
SWTEPEHDKF LEALQLFDRD WKKIEAFVGS KTVIQIRSHA QKYFLKVQKN GTAEHLPPPR  120
PKRKAAHPYP QKASKNAPVH SQVSGTFQSS SAQLDPGHFL RPDSSSMLMI PMATAAASSW  180
TNNVQTVSLS PVTKGPAVAN NRSSSTESIP KARVAGEVTD QGNNGHPLRV LPDFAQVYTF  240
IGSVFDPDAS GHLQKLKKMD PIDVETVLLL MRNLSINLTS PDFEDHRRLL SSYEIDTDTT  300
DDGGVNSILV DDGQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422040.10.0protein REVEILLE 6
RefseqXP_006490627.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-146RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A067F0T30.0A0A067F0T3_CITSI; Uncharacterized protein
TrEMBLV4S8W80.0V4S8W8_9ROSI; Uncharacterized protein
STRINGXP_006490627.10.0(Citrus sinensis)
STRINGXP_006422040.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-131MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]