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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_37243_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 196aa MW: 21086.8 Da PI: 7.2604 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.9 | 9.9e-13 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+e l +v+++G+g Wk I r R+ ++k++w++ Neem_37243_f_1 5 KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEfnpflFSRSNIDLKDKWRN 55 79*******************************9**989**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.378 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-9 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-9 | 5 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-15 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.40E-22 | 6 | 56 | No hit | No description |
SMART | SM00526 | 0.0013 | 124 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 1.6E-7 | 125 | 167 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 13.503 | 126 | 196 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 5.99E-8 | 127 | 173 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 2.6E-6 | 128 | 162 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGNPKQKWTA EEEEALRAGV AKHGTGKWKN IQRDPEFNPF LFSRSNIDLK DKWRNMSVSA 60 GGNGPREKSR TPKPKGGSDA PAVPLSTPQT SALPAAVAND ASTDPIVDDS ARSSAPNDFV 120 IFKISQSPRY NELIFEALAA LKEPNGSDVS AILNYIETVC PTTIAATAIE KLLVLENFTA 180 NGLCLGGQYS LRAMPL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451517.1 | 8e-83 | single myb histone 4 | ||||
Refseq | XP_006475491.1 | 8e-83 | single myb histone 4-like | ||||
Swissprot | F4I7L1 | 2e-41 | TRB4_ARATH; Telomere repeat-binding factor 4 | ||||
TrEMBL | V4TW20 | 2e-81 | V4TW20_9ROSI; Uncharacterized protein | ||||
STRING | XP_006475491.1 | 3e-82 | (Citrus sinensis) | ||||
STRING | XP_006451517.1 | 3e-82 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2321 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 3e-44 | MYB_related family protein |
Publications ? help Back to Top | |||
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