![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_371_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 91aa MW: 10143.7 Da PI: 11.2657 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.9 | 3.1e-29 | 34 | 83 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +++fsstgklyeys+ Neem_371_f_4 34 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYEYSN 83 8***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.6E-40 | 25 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.581 | 25 | 85 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.98E-29 | 25 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.54E-38 | 26 | 89 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 27 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-29 | 27 | 47 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-26 | 34 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-29 | 47 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-29 | 62 | 83 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 91 aa Download sequence Send to blast |
MGRSETPRKP VPSTRERVGG TLGDMGRGKI VIRRIDNSTS RQVTFSKRRN GLLKKARELS 60 ILCDAEVGLM VFSSTGKLYE YSNSRLDNLS P |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 25 | 89 | 1 | 65 | MEF2C |
5f28_B | 1e-20 | 25 | 89 | 1 | 65 | MEF2C |
5f28_C | 1e-20 | 25 | 89 | 1 | 65 | MEF2C |
5f28_D | 1e-20 | 25 | 89 | 1 | 65 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148344.1 | 5e-34 | hypothetical protein PHAVU_006G200400g | ||||
Refseq | XP_024034710.1 | 9e-34 | MADS-box transcription factor 27 isoform X3 | ||||
Swissprot | Q6EP49 | 3e-32 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
Swissprot | Q6Z6W2 | 3e-32 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
TrEMBL | A0A1L5YEI1 | 8e-33 | A0A1L5YEI1_PRUPE; MADS-box protein 12 | ||||
TrEMBL | A0A438GU85 | 3e-33 | A0A438GU85_VITVI; MADS-box transcription factor ANR1 | ||||
STRING | VIT_03s0097g00160.t01 | 2e-33 | (Vitis vinifera) | ||||
STRING | EOX98615 | 2e-33 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14210.1 | 3e-33 | AGAMOUS-like 44 |
Publications ? help Back to Top | |||
---|---|---|---|
|