PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_36468_a_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 42aa MW: 4705.1 Da PI: 3.8835 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 2e-07 | 11 | 41 | 3 | 30 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIart 30 WT+e d+ + +a + ++ + +W++Ia+ Neem_36468_a_1 11 VWTKEQDKAFENALATYPEDasdRWEKIAAD 41 7****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.3E-7 | 10 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-5 | 11 | 41 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.13E-4 | 12 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 42 aa Download sequence Send to blast |
MTVDEVGSSS VWTKEQDKAF ENALATYPED ASDRWEKIAA DL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM464211 | 6e-41 | AM464211.2 Vitis vinifera contig VV78X096187.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437648.1 | 2e-19 | transcription factor SRM1 | ||||
Refseq | XP_006437649.1 | 2e-19 | transcription factor SRM1 | ||||
Refseq | XP_006484484.1 | 2e-19 | transcription factor SRM1 | ||||
Refseq | XP_015387550.1 | 2e-19 | transcription factor SRM1 | ||||
Refseq | XP_015387551.1 | 2e-19 | transcription factor SRM1 | ||||
Refseq | XP_024041573.1 | 2e-19 | transcription factor SRM1 | ||||
Refseq | XP_024041574.1 | 2e-19 | transcription factor SRM1 | ||||
Refseq | XP_024041575.1 | 2e-19 | transcription factor SRM1 | ||||
Refseq | XP_024041576.1 | 2e-19 | transcription factor SRM1 | ||||
Refseq | XP_024956475.1 | 2e-19 | transcription factor SRM1 | ||||
TrEMBL | A0A2H5P3M4 | 3e-18 | A0A2H5P3M4_CITUN; Uncharacterized protein (Fragment) | ||||
STRING | XP_006484484.1 | 7e-19 | (Citrus sinensis) | ||||
STRING | XP_006437648.1 | 7e-19 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-11 | MYB family protein |