PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_36183_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 347aa MW: 38730.8 Da PI: 10.2123 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.8 | 1.7e-31 | 281 | 338 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp ++++tYegeHnh+ Neem_36183_f_1 281 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPAMLVVTYEGEHNHP 338 99***********************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 4.9E-18 | 232 | 277 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.1E-33 | 267 | 339 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.4 | 274 | 340 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-27 | 277 | 339 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.9E-39 | 279 | 339 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-27 | 281 | 338 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MEEVEEANKA AVESCHRVLS LLSQPQDQVQ YRNLVGETGE AVFRFKKVVS LLNTGLGHAR 60 VRKLKKFPAS VNQSILLDNP HHRTEIPSKS LQFLQSSFHE NPIQETGSLS KSSLSLGNPS 120 LELISNGKNH LQLAQQTPSS HYHFLQQQQL QQRLQLQQQQ QMKLQAEMMF RKSNSGVNLN 180 FDSSSCTPTM SSTTRSFISS LSMDGSVANL DGSAFHLIGA PRSSDQSSQQ HKRKCSGRAE 240 DGSVKCGSSG RCHCSKKRKH RVKRSIKVPA ISNKLADIPP DDYSWRKYGQ KPIKGSPHPR 300 GYYKCSSMRG CPARKHVERC LEDPAMLVVT YEGEHNHPRL PSQSATT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 275 | 341 | 10 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00284 | DAP | Transfer from AT2G30590 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC485291 | 6e-49 | KC485291.1 Jatropha curcas WRKY transcription factor (WRKY39) gene, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006479579.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Refseq | XP_024045169.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Refseq | XP_024045170.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Refseq | XP_024954695.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-134 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | V4VV69 | 0.0 | V4VV69_9ROSI; Uncharacterized protein | ||||
STRING | XP_006479579.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443899.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3567 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 1e-106 | WRKY DNA-binding protein 21 |