PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3605_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bHLH | ||||||||
Protein Properties | Length: 108aa MW: 12164.1 Da PI: 10.7202 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.6e-11 | 31 | 71 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Neem_3605_f_1 31 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 71 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-15 | 20 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.224 | 21 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-13 | 26 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-11 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.46E-10 | 30 | 75 | No hit | No description |
Pfam | PF00010 | 1.3E-8 | 31 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MSSKGKAAVN LNGKTRASRG SATDPQSLYA RKRRERINER LRILQNLVPN GTKVDISTML 60 EEAVQYVKFL QLQIKLLSSD ELWMYAPIAY NGMNIGLDHL KITASRLS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024034827.1 | 3e-64 | transcription factor bHLH84 | ||||
Refseq | XP_024957794.1 | 2e-64 | transcription factor bHLH84 | ||||
Swissprot | Q7XHI9 | 1e-58 | BH084_ARATH; Transcription factor bHLH84 | ||||
TrEMBL | A0A067F317 | 7e-63 | A0A067F317_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5P8R3 | 7e-63 | A0A2H5P8R3_CITUN; Uncharacterized protein | ||||
STRING | XP_006487068.1 | 1e-63 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2834 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-47 | bHLH family protein |