PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_35989_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 185aa MW: 21066 Da PI: 7.4322

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_35989_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.1e-09	1	34	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +N++f+ Lr+l+P++ +K++ a+++ A+eYIk+L Neem_35989_f_1 1 MNDKFAALRSLVPNP-----TKNDRASVVGDAIEYIKEL 34 8************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00010	1.2E-6	1	34	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.85E-6	1	38	No hit	No description
PROSITE profile	PS50888	12.754	1	34	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-11	1	42	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.52E-10	1	49	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MNDKFAALRS LVPNPTKNDR ASVVGDAIEY IKELLRTVNE LKLLVEKKRS ARERSKRQKT 60 EDDDGCDIKP LVDQDQAYNP SLRSSWLQRK SKDSEVDVRI IDDEVTIKLV QRKKIDCLLF 120 VSKVLDELQL DLHHVAGGHI GDYYSFLFNT KIYEGSSVYA GAIANKLIEV MDRQYAAIAP 180 TNCSY

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445526.1	1e-108	transcription factor bHLH91 isoform X1
Refseq	XP_024042786.1	1e-109	transcription factor bHLH91 isoform X2
Refseq	XP_024042787.1	1e-109	transcription factor bHLH91 isoform X2
Refseq	XP_024949273.1	1e-109	transcription factor bHLH91-like isoform X1
Refseq	XP_024949278.1	1e-109	transcription factor bHLH91-like isoform X2
Refseq	XP_024949279.1	1e-109	transcription factor bHLH91-like isoform X1
Refseq	XP_024949282.1	1e-109	transcription factor bHLH91-like isoform X1
Swissprot	Q84TK1	1e-73	BH010_ARATH; Transcription factor bHLH10
TrEMBL	A0A067HC60	1e-107	A0A067HC60_CITSI; Uncharacterized protein
TrEMBL	V4U988	1e-107	V4U988_9ROSI; Uncharacterized protein
STRING	XP_006464331.1	1e-108	(Citrus sinensis)
STRING	XP_006445526.1	1e-107	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	9e-68	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]