PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_35890_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 289aa MW: 32481.1 Da PI: 8.2984

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_35890_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Neem_35890_f_1 50 YSCSFCRREFKSAQALGGHMNVH 72 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.01E-6	47	77	No hit	No description
SMART	SM00355	0.0084	50	72	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.157	50	77	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEQTQYWMWM KRQREILKSM NSFNDSWEER AFAEDAAGSL GGSAWPPRSY SCSFCRREFK 60 SAQALGGHMN VHRRDRARLK QSLSLHNEVH LHQNHNRNSL KLSDPKCPSE FCTSDCNRDQ 120 KSSPGNVVAS TLSPSRVFTQ ENLSSLEKTF LSISDTKPDH RQEKSPGEEG SNTRVSSGSG 180 SLEKTFLSIS DTKPDHRQEK SPGEEGSNIS ISIGHHGQDY VETNLSVGLN SVFSRDRPTG 240 SCSDEAISCK RTKIVATSIL PFFLANDKYR LQKENLDLEL RLGDPPKVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-12	45	72	2	29	superman protein
2l1o_A	2e-12	45	72	2	29	Transcriptional regulator SUPERMAN
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022748260.1	3e-81	probable transcriptional regulator RABBIT EARS
TrEMBL	A0A1Q3BQK1	1e-77	A0A1Q3BQK1_CEPFO; Zf-C2H2_6 domain-containing protein
STRING	EOY18086	2e-73	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5128	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	1e-27	zinc-finger protein 10