![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_35863_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 350aa MW: 40433.1 Da PI: 8.9746 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.2 | 7.5e-07 | 64 | 85 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Neem_35863_f_1 64 TCEECGATFKKPAYLKQHMQSH 85 6*******************99 PP | |||||||
2 | zf-C2H2 | 16.5 | 2.4e-05 | 101 | 125 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C+ dC+ s++rk++L+rH+ H Neem_35863_f_1 101 FICSvdDCHASYRRKDHLTRHLLQH 125 789999***************9887 PP | |||||||
3 | zf-C2H2 | 14.7 | 8.7e-05 | 130 | 155 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp +C++ F+ + n+krH + H Neem_35863_f_1 130 FRCPieNCSREFTIQGNMKRHVKEfH 155 89********************9988 PP | |||||||
4 | zf-C2H2 | 14.7 | 9e-05 | 244 | 267 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C C sFs+ksnL++H + H Neem_35863_f_1 244 CMfkGCRHSFSTKSNLQQHVKAvH 267 66779***************9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.52E-8 | 17 | 85 | No hit | No description |
PROSITE profile | PS50157 | 8.891 | 19 | 46 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 28 | 19 | 41 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.074 | 63 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0029 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.1E-6 | 64 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.99E-6 | 97 | 127 | No hit | No description |
PROSITE profile | PS50157 | 9.494 | 101 | 130 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0093 | 101 | 125 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.0E-10 | 101 | 127 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 103 | 125 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.42E-6 | 128 | 156 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 128 | 152 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.242 | 130 | 160 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0096 | 130 | 155 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 132 | 155 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 12 | 184 | 209 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 186 | 209 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 10 | 212 | 233 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.78E-8 | 225 | 279 | No hit | No description |
PROSITE profile | PS50157 | 11.198 | 242 | 272 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0016 | 242 | 267 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 243 | 268 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 244 | 268 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 10 | 273 | 299 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 275 | 299 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MEEEKGGKES PKPRDIRRYF CDYCGICRSK KSLITSHILA HHKEKVNEES VDGDGQIDGV 60 KTNTCEECGA TFKKPAYLKQ HMQSHSLEVG RPPEKLHQRP FICSVDDCHA SYRRKDHLTR 120 HLLQHQGKLF RCPIENCSRE FTIQGNMKRH VKEFHNEASA STDVKYEKQY ICSEIGFKLD 180 SVEAFCSEPK CMKYFTNKQC LEAHIRSCHQ HIKCEICGTK QLRKNIKRHL RTHEASGSPE 240 RIKCMFKGCR HSFSTKSNLQ QHVKAVHHEI RPFACGLPGC GMRFAYKHVR DNHEKSGCHT 300 YFLGDFTEAD EQFRSRPRGG RKRKCPTVEM LTRKRVSAPT STESCNVDSD |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 315 | 323 | RPRGGRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
![]() |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006482413.1 | 0.0 | transcription factor IIIA isoform X1 | ||||
Swissprot | Q84MZ4 | 1e-134 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A2H5P1N7 | 0.0 | A0A2H5P1N7_CITUN; Uncharacterized protein | ||||
STRING | XP_006482413.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4714 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-136 | transcription factor IIIA |