PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3558_f_12

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 276aa MW: 30773.1 Da PI: 4.4945

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3558_f_12	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.8	3.9e-11	14	44	1	31
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g+WT+eEd++l+d+++++G g+W++ +++ Neem_3558_f_12 14 KGPWTAEEDQKLIDYIQEHGHGRWRLLPKHA 44 79************************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.5E-14	5	43	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.984	9	60	IPR017930	Myb domain
SuperFamily	SSF46689	2.73E-9	9	45	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-9	14	45	IPR001005	SANT/Myb domain
CDD	cd00167	1.48E-7	16	43	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MGKSPCSDKN GLKKGPWTAE EDQKLIDYIQ EHGHGRWRLL PKHADPVTHS PRLDLLELSS 60 ILGSSQLLNA PNLIGLGSLL NPDLLNLANT LFSCQSRNQE FNIPQNLEQN QSFEQNLLPY 120 PLNQACRNPP AAESNPEYLN QTQLLQANLE QFSSNPTNFS WQNVLPNLCQ DNVEQFSMSK 180 ECIPTPNYAC RQQETDHNQA RIHDPFLSQY QSFVPNNINC GSIANMSFGS LLSTPSSSST 240 PLNSSSTTYV NASTEDERDS YCSNILFDNL DAIALV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006464660.1	1e-57	transcription factor MYB41
STRING	XP_006464660.1	5e-57	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-20	myb domain protein 93