PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_354_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YB
Protein Properties Length: 181aa    MW: 19652.9 Da    PI: 5.7691
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_354_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.32.3e-5827122297
         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                   reqdrflPianvsrimkk+lPan+kiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfedyveplkvyl+++re+egek
  Neem_354_f_2  27 REQDRFLPIANVSRIMKKALPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEK 122
                   89********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-5422130IPR009072Histone-fold
SuperFamilySSF471133.11E-4029128IPR009072Histone-fold
PfamPF008083.8E-283296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.0E-216078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.0E-217997No hitNo description
PRINTSPR006157.0E-2198116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MADSDNESGE RNQNTSSIAG NSESSPREQD RFLPIANVSR IMKKALPANG KISKDAKETV  60
QECVSEFISF VTGEASDKCQ REKRKTINGD DLLWAMTTLG FEDYVEPLKV YLQRFREMEG  120
EKTVARDKDA APGSGGGIGE YGMVMMGHAG ELNQGHVYGA GGFHQMAMSK GGPASNLGRP  180
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4825117193NF-YB
4awl_B9e-4925117294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-4925117294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027930250.15e-89nuclear transcription factor Y subunit B-3-like
SwissprotQ75IZ71e-68NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBLA0A4D6KKW91e-87A0A4D6KKW9_VIGUN; Nuclear transcription factor Y
STRINGXP_004491514.12e-86(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.16e-71nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]