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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_35423_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 193aa MW: 21294.5 Da PI: 5.238 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.5e-09 | 8 | 30 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 tW++Ia+ ++ gRt++++k++w++ Neem_35423_f_1 8 TWSAIAAQLP-GRTDNEIKNHWHT 30 8*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.728 | 1 | 36 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.96E-8 | 7 | 42 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.2E-7 | 7 | 30 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-13 | 7 | 45 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.83E-6 | 9 | 32 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MATVTFTTWS AIAAQLPGRT DNEIKNHWHT SLKKRLKQTS VTNEAKRKPK HPIYDDIDRQ 60 GEPIASGNSQ EGESKVKVDS REGESKLNNH HLNHMITPSI LESSPSSSQP SSSDQLSSIT 120 TDTSVVSSTE LMLDNKDVLF QPYAEASGSF WTEPFLADNS FNLYISNDLL APLSSTGYAS 180 PHSSFLDGEI LWP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 37 | LKKRLKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021296898.1 | 3e-43 | transcription factor MYB4-like | ||||
TrEMBL | A0A061E3S1 | 1e-40 | A0A061E3S1_THECC; Myb domain protein 15, putative | ||||
TrEMBL | A0A067EX86 | 1e-40 | A0A067EX86_CITSI; Uncharacterized protein | ||||
STRING | EOX99262 | 2e-41 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 7e-12 | myb domain protein 63 |