![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_35182_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 294aa MW: 32379 Da PI: 6.7837 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 109 | 2.3e-34 | 173 | 230 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ Neem_35182_f_2 173 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHP 230 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-35 | 157 | 232 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-30 | 164 | 232 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.765 | 167 | 232 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-40 | 172 | 231 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.3E-27 | 173 | 230 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MSNEPGNLYF RSLFQDDQHG DITGTSMPVS IAGSSPDYNP QQFDPSQMSY TDCLHGFMDY 60 NSLEKAFGMS PSSSEVFSSI EGHQKQIIGP GELCGGSENN VGTTPNSSIS SSSTEAGAEE 120 DSGKSKKDLQ PKGSEDGGDS SKKISKAKNK KGEKRQKEPR FAFMTKSEVD HLEDGYRWRK 180 YGQKAVKNSP YPRSYYRCTT QKCTVKKRVE RSFQDPSIVI TTYEGQHNHP IPTTLRGNAA 240 GMFQPSSMLT PTMPMNLSSF PQEWLGLLAC TAVFLRGILV SKMGENDDEE GKNA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-29 | 162 | 232 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-29 | 162 | 232 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JF708976 | 7e-39 | JF708976.1 Dimocarpus longan WRKY transcription factor 29-1 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445471.1 | 1e-105 | PREDICTED: probable WRKY transcription factor 71 | ||||
Swissprot | Q8VWJ2 | 6e-70 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A0D2S1Y1 | 1e-104 | A0A0D2S1Y1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G157300.1 | 1e-105 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1524 | 26 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18170.1 | 8e-60 | WRKY DNA-binding protein 28 |
Publications ? help Back to Top | |||
---|---|---|---|
|