PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Neem_35172_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 267aa MW: 29806 Da PI: 11.3324

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_35172_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	27	46	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k Fs + +L++H+ Neem_35172_f_1 27 FQCSLCPKAFSESGSLRKHL 46 89*****************8 PP
2	zf-C2H2	23.9	1e-07	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg +Fsr+ nL++H+r+H Neem_35172_f_1 63 FGCTECGSRFSRPGNLTVHLRSH 85 56********************9 PP
3	zf-C2H2	13.8	0.00018	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+ F+ +snL++H+ tH Neem_35172_f_1 91 FQCTLCSSKFTIRSNLTKHLHTH 113 89******************999 PP
4	zf-C2H2	19.9	1.9e-06	119	142	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ Cg+ Fs+ +L++H t H Neem_35172_f_1 119 FKCTECGRKFSQGGSLRSHVLTkH 142 89*****************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.53E-6	24	66	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-9	25	58	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.695	27	62	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.44	27	53	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.25E-16	57	109	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-15	59	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	0.086	63	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.007	63	85	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	15.396	63	90	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.0E-13	83	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	15.272	91	118	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.086	91	113	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.06E-12	100	144	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.1E-13	111	140	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13894	7.0E-4	119	142	No hit	No description
PROSITE profile	PS50157	12.528	119	147	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0014	119	142	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	121	142	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MAVATYLQTY RNTPCTVTGI PRSDRPFQCS LCPKAFSESG SLRKHLLGDL KRHNLTHTGE 60 KAFGCTECGS RFSRPGNLTV HLRSHTGHRP FQCTLCSSKF TIRSNLTKHL HTHTGERPFK 120 CTECGRKFSQ GGSLRSHVLT KHAGNSDATV SPAAWAARGV AIAGRKSRGV ILHDCVSRSS 180 DGRGPWPSLR ALPPRNLFTG TQEALAWRNY DTSLHHRARR SSSAVVVGVL CRLTGWKWNH 240 CRHRRSLCAH RLDRNLWKPL WEPAATL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2i13_A	2e-27	24	145	18	183	Aart
2i13_B	2e-27	24	145	18	183	Aart

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	5e-10	transcription factor IIIA