PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3503_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 278aa MW: 30526.5 Da PI: 4.4635 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 6.1e-08 | 14 | 46 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 +g+W++eEd +l+d++++ G+g +W + ++++g Neem_3503_f_2 14 KGPWSPEEDAKLKDYIEKQGTGgNWIALPQKIG 46 79***********************99999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-9 | 5 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.01E-5 | 8 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.76 | 9 | 50 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 3.6E-6 | 14 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00372 | 16 | 40 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE KQGTGGNWIA LPQKIGKDSN GANLGEDGQY 60 SQGFSNSAIE RLQLHMQLQS LQNPLSFYNS PALWPKLHPL QEKMLQNLQS LNQGQNSIMQ 120 NVVPGSQLGH EQNVDNFPGQ STAPSTFPHN YQPISNSKVQ EFGNSLNGIS SSDSSIPVNP 180 VPKANGIEQS NAANQEFSTF QAELESFLNN KGVGFTAQED HQIGEFDCFN ATMNGSKDSL 240 IWWANEFDSK SASSNSWDST PALQSEGMFQ DFELGYNL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006453430.1 | 2e-91 | transcription factor MYB36 | ||||
Refseq | XP_006474624.1 | 2e-91 | transcription factor MYB36 | ||||
TrEMBL | B9SJP4 | 1e-105 | B9SJP4_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002526213.1 | 1e-106 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 5e-26 | MYB family protein |