PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_34725_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 221aa    MW: 24526.7 Da    PI: 10.4704
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_34725_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-18138184148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
   Neem_34725_f_2 138 KGQWTDEEDRKLIKLVKQYGVRKWAQIAEKLS-GRAGKQCRERWHNHL 184
                      799*****************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.343133188IPR017930Myb domain
SMARTSM007172.7E-17137186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-24137187IPR009057Homeodomain-like
SuperFamilySSF466896.42E-19138191IPR009057Homeodomain-like
PfamPF139216.7E-17141189No hitNo description
CDDcd001672.33E-16141184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MESGGGGGGG GCTSFRYGNL QHKPHIYRPS PPLTAIDRFL WGQSNFSQQQ TQNNVKNSGR  60
VVLPTSGAIG AAYCSEFLWA NNQEASFVDG LFADGETLNW SHGRNQNVSS NEEIKVAAKS  120
CKGVGKRAKK GSSAALIKGQ WTDEEDRKLI KLVKQYGVRK WAQIAEKLSG RAGKQCRERW  180
HNHLRPDIKW FDAKTIGFVH RGRIYPHTII SSSLVVTSFF M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-19136189558B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605813.11e-66transcription factor MYB64-like
TrEMBLA0A2N9I0S32e-66A0A2N9I0S3_FAGSY; Uncharacterized protein
STRINGcassava4.1_033771m4e-66(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.14e-32myb domain protein 119