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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Neem_3468_f_2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
| Family |
SRS |
| Protein Properties |
Length: 175aa MW: 18372.4 Da PI: 8.7358 |
| Description |
SRS family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 90.1 | 4.8e-28 | 2 | 136 | 40 | 154 |
DUF702 40 kstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrel..kskkqsalsstkls.saeskkeletss............lPeevsseavf 115
+stWvpaa+rre++ + a + + ++ kr+r l + ++++++ s +++ +a++++ l++++ lP +v+++a f
Neem_3468_f_2 2 RSTWVPAARRREKKLMSAVSGGSCGGGGggssgSSCGVKRPRVLwpNVNASTSTPSPSTPiNASASTALSFNTipchqeesfkksLPGQVQAAANF 97
9***********9777776654443333555566666777777744222222222222221222222222222666777777888*********** PP
DUF702 116 rcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
rc+rv+++ d+e+e++Y ++v+i+GhvfkG+Lyd+G +e
Neem_3468_f_2 98 RCIRVTAITDDEAEVGYVATVNISGHVFKGYLYDHGYDE 136
************************************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 175 aa
Download sequence Send
to blast |
MRSTWVPAAR RREKKLMSAV SGGSCGGGGG GSSGSSCGVK RPRVLWPNVN ASTSTPSPST 60
PINASASTAL SFNTIPCHQE ESFKKSLPGQ VQAAANFRCI RVTAITDDEA EVGYVATVNI 120
SGHVFKGYLY DHGYDEKKLF PCISGMQMEN DVSTARTRDS SSPVGDQSGY AASGN
|
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 3e-23 | Lateral root primordium (LRP) protein-related |
