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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_34357_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 27862.3 Da PI: 8.9026 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.3 | 2.8e-32 | 168 | 226 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Neem_34357_f_1 168 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 226 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-33 | 153 | 226 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-28 | 160 | 227 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.356 | 163 | 228 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-37 | 168 | 227 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-25 | 169 | 225 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSSTTQAMLN QSLFDQEQEM QTQMGFLPFP PSLSFPLLGS CNNQSLKSFT INSLPHPSSL 60 AAHENEVPSS TTINLTETLL LSSAGNIKQR EDHITSSADL GGPQLLSLQR SNANLWAWGE 120 ANESLSSKKM AGEDHLGVAA VKMKKIKSRR KVREPRFCFK TMSDIDVLDD GYKWRKYGQK 180 VVKNTQHPRS YYRCTQDNCR VKKRVERLAE DPRMVITTYE GRHVHSPSHD QEDSSQASSH 240 LNNFFW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 160 | 225 | 9 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 160 | 225 | 9 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006464513.1 | 1e-125 | probable WRKY transcription factor 13 isoform X1 | ||||
Swissprot | Q9SVB7 | 4e-64 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A067DNU1 | 1e-125 | A0A067DNU1_CITSI; Uncharacterized protein | ||||
STRING | XP_006464513.1 | 1e-124 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6106 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 6e-67 | WRKY DNA-binding protein 13 |