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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_34330_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 148aa MW: 17320.7 Da PI: 10.0854 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.7 | 3.1e-25 | 19 | 140 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk.........rknratksgyWkatg 87 pG+rF+Pt ee++ +yL+kk + ++ + ++i+e+diy++ePwdL ++++e+y Fs+ ++k ++gk +r+t++g Wk g Neem_34330_f_2 19 LPGYRFSPTGEEII-DYLEKKRLDPDNFCVDMIQELDIYSYEPWDLA----GTKSEVYIFSEPRSKGENGKprpkgkngkLFHRKTTKGCWKING 108 59************.99*99988888777799**************7....34679******9999986554333333326667799******** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k +v + +g k+tL f +g++ +t+W mhe+ + Neem_34330_f_2 109 KGSKVNR-----IGRKRTLSFRRGQS----NTEWAMHEFYI 140 ***9988.....9********95543....68******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-26 | 17 | 145 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.81 | 18 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-17 | 20 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MDSFRSITAP REVALRKSLP GYRFSPTGEE IIDYLEKKRL DPDNFCVDMI QELDIYSYEP 60 WDLAGTKSEV YIFSEPRSKG ENGKPRPKGK NGKLFHRKTT KGCWKINGKG SKVNRIGRKR 120 TLSFRRGQSN TEWAMHEFYI TEEDSRYK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-12 | 20 | 146 | 22 | 151 | NAC domain-containing protein 19 |
3swm_B | 3e-12 | 20 | 146 | 22 | 151 | NAC domain-containing protein 19 |
3swm_C | 3e-12 | 20 | 146 | 22 | 151 | NAC domain-containing protein 19 |
3swm_D | 3e-12 | 20 | 146 | 22 | 151 | NAC domain-containing protein 19 |
3swp_A | 3e-12 | 20 | 146 | 22 | 151 | NAC domain-containing protein 19 |
3swp_B | 3e-12 | 20 | 146 | 22 | 151 | NAC domain-containing protein 19 |
3swp_C | 3e-12 | 20 | 146 | 22 | 151 | NAC domain-containing protein 19 |
3swp_D | 3e-12 | 20 | 146 | 22 | 151 | NAC domain-containing protein 19 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13336 | 4 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 5e-19 | NAC domain containing protein 52 |