PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3422_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 117aa MW: 13151.4 Da PI: 4.2649 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.4 | 2.1e-10 | 32 | 63 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WTteEd +l++ ++ +G ++Wk++a + Neem_3422_f_2 32 KGAWTTEEDRKLAEFIAIHGAKRWKAVAVKAE 63 79*************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-9 | 26 | 61 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-7 | 27 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.271 | 27 | 70 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.3E-8 | 32 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.74E-6 | 34 | 59 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MAAVSKESIK TEEEQVETKR DLTSTSKTEV NKGAWTTEED RKLAEFIAIH GAKRWKAVAV 60 KAETAKEENS SASNSGGEES NNIIGFNVDE FFDFSDEDPM NLEWIGRFLE PDESFKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024958001.1 | 1e-14 | transcription factor WER-like | ||||
TrEMBL | A0A1R3H791 | 5e-32 | A0A1R3H791_9ROSI; Uncharacterized protein | ||||
STRING | XP_002535033.1 | 7e-19 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 1e-07 | myb domain protein 118 |