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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Neem_34205_f_1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family |
CO-like |
Protein Properties |
Length: 463aa MW: 52558.2 Da PI: 8.5294 |
Description |
CO-like family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 26.2 | 1.7e-08 | 49 | 92 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + +k+++++C +++ +lC+ C + H+ H++v
Neem_34205_f_1 49 ARACDSCIKKRARWYCASDDAFLCQACDCSVHSAnplarrHERV 92
578*****************************657888888876 PP
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2 | CCT | 67.7 | 3.2e-23 | 406 | 449 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
Neem_34205_f_1 406 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 449
9*****************************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 463 aa
Download sequence Send
to blast |
MSWSQKFNLF LFSLSLNPKV HPKRRCTAKA LLWMISSKKV ANAVGGKTAR ACDSCIKKRA 60 RWYCASDDAF LCQACDCSVH SANPLARRHE RVRLKTASFK SATNAQSVPA NNDSDSVPPW 120 HKGFTRKART PRYGKLKTGK SIRNNTLPLV PEVGSDEISH EENNEEDQLL YRVPVFDRFA 180 VELRTSANSN EGEKTADQDH HVNGSESKPA ITTGYHRDVD SLHGFLPSDM ELAEFAADVE 240 SLLGRGFENE SLAMEELGLV DHREKEFKES SRKLCFCRIS AAVKHDQIDL EREPFELNFD 300 YDSHATCEDE EQKVIKGEIT MKINGEDNDD DAKKKRKKLL RLDYEAVITA WASQGSPWTT 360 GDRPEFDPDE FWPDCTATCA TEVHQHQPYA EFAGIGAYPG MVDSGREARV SRYREKRRTR 420 LFSKKIRYEV RKLNAEKRPR MKGRFVKRAT SFAGPPAFPL LSK
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 333 | 337 | KKRKK |
2 | 416 | 432 | RRTRLFSKKIRYEVRKL |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 1e-106 | B-box type zinc finger protein with CCT domain |