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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_33828_f_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 247aa MW: 28357 Da PI: 9.0964 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 89.2 | 4.4e-28 | 42 | 121 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+++e+laL+++r+em+++++++ lk+plW+evs+k++e g++rs+k+Ckek+en+ k+++++k+g++++ ++++fdql+
Neem_33828_f_1 42 RWPREETLALLKIRSEMDTAFKDSGLKAPLWDEVSRKLSELGYNRSAKKCKEKFENIYKYHRRTKQGRSGK------SYRFFDQLQ 121
8******************************************************************9984......599****98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50090 | 7.608 | 35 | 99 | IPR017877 | Myb-like domain |
| SMART | SM00717 | 1.9E-4 | 39 | 101 | IPR001005 | SANT/Myb domain |
| CDD | cd12203 | 3.73E-24 | 41 | 106 | No hit | No description |
| Pfam | PF13837 | 9.0E-20 | 41 | 123 | No hit | No description |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 247 aa Download sequence Send to blast |
MESSTLPENP GPVTGNQENG GAEEEEERVK GAEGERNFGG NRWPREETLA LLKIRSEMDT 60 AFKDSGLKAP LWDEVSRKLS ELGYNRSAKK CKEKFENIYK YHRRTKQGRS GKSYRFFDQL 120 QALDNNHSFV PFSSPERINL STAMEINPIS EIKNDVQCPI PNPSSSFMDI STSTTSTSSK 180 ETGGSQKKKR KLTGFFERLM KEVMEKQEKL QKKFIEAIEK CEQERVAREE AWKMQELARI 240 TQVFRAI |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 186 | 191 | KKKRKL |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006427884.1 | 1e-127 | trihelix transcription factor GT-2 | ||||
| Refseq | XP_006464545.1 | 1e-127 | trihelix transcription factor GT-2-like isoform X1 | ||||
| Swissprot | Q39117 | 3e-56 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
| TrEMBL | A0A067ER21 | 1e-128 | A0A067ER21_CITSI; Uncharacterized protein | ||||
| STRING | XP_006464545.1 | 1e-127 | (Citrus sinensis) | ||||
| STRING | XP_006427884.1 | 1e-127 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM5995 | 28 | 47 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G76890.2 | 4e-43 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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