PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3363_f_7
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 394aa    MW: 44523.6 Da    PI: 6.764
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3363_f_7genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.69e-083403732154
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    k +yp++e++++L +++gL+ +q+ +WF N+R +
  Neem_3363_f_7 340 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 373
                    469*****************************87 PP
2ELK28.92.5e-10294315122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELKh+L+++Y+++++++++E++
  Neem_3363_f_7 294 ELKHELKQGYKEKIVDIREEIL 315
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.8E-20127171IPR005540KNOX1
PfamPF037904.8E-18129170IPR005540KNOX1
SMARTSM012566.9E-29182237IPR005541KNOX2
PfamPF037911.1E-20187236IPR005541KNOX2
PfamPF037899.0E-7294315IPR005539ELK domain
PROSITE profilePS512139.969294314IPR005539ELK domain
SMARTSM011886.1E-4294315IPR005539ELK domain
PROSITE profilePS5007111.726314377IPR001356Homeobox domain
SMARTSM003894.7E-11316381IPR001356Homeobox domain
SuperFamilySSF466894.11E-16316379IPR009057Homeodomain-like
CDDcd000867.94E-11317378No hitNo description
Gene3DG3DSA:1.10.10.603.9E-25321378IPR009057Homeodomain-like
PfamPF059201.1E-17334373IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAFHHNHLSQ DLPLHHFTDQ QQPQQSIAET TAPPNWLNTA LLRAQQQQPP QQQPSHFTDT  60
NFLNLRTTAN NNNNNAANNN TTSESDASQT PNQWLSRTSS SLLHRNHSVV VESGVGGGDG  120
VVNWQNAKFK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ HVVAKYSTLG  180
AGQGLVTDDK ELDQFMTHYV LLLCSFKEQL QQHVRVHAME AVMACWEIEQ SLQSLTGVSP  240
GEGTGATMSD DDEDQVDSDA NLFDGSLDGP DSMGFGPLIP TESERSLMER VRQELKHELK  300
QGYKEKIVDI REEILRKRRA GKLPGDTTSV LKAWWQSHSK WPYPTEEDKA RLVQETGLQL  360
KQINNWFINQ RKRNWHSNPS TSTVLKSKRK RYFK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370390RKRNWHSNPSTSTVLKSKRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3888768e-59FJ388876.1 Juglans nigra KNAT3-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450342.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_006483429.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A067E7A20.0A0A067E7A2_CITSI; Uncharacterized protein
TrEMBLV4TSP30.0V4TSP3_9ROSI; Uncharacterized protein
STRINGXP_006483429.10.0(Citrus sinensis)
STRINGXP_006450342.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]