PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_33457_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 204aa    MW: 24241.8 Da    PI: 9.1855
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_33457_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.12.8e-261686169
             NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkya 69
                    +ppGfrFhPtdeelv++yL+kk+++k+++l +vik+vd+yk+ePwdL+   k+ + e++ewyfFs++dkky+
  Neem_33457_f_1 16 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKDVDLYKIEPWDLQDlcKIGTeEQNEWYFFSHKDKKYP 86
                    69****************************.9***************943455552555***********96 PP
2NAM108.67.3e-3410918452128
             NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s +++l+g++ktLvfykgrap+g+k+dW+mheyr 
  Neem_33457_f_1 109 TEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYS-RHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRH 184
                     34667**************************************.889****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-261086IPR003441NAC domain
PROSITE profilePS5100549.30416204IPR003441NAC domain
PfamPF023653.5E-2817183IPR003441NAC domain
SuperFamilySSF1019412.62E-34105189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQVLTPWDNM NSFSHVPPGF RFHPTDEELV DYYLRKKIAS KRIDLDVIKD VDLYKIEPWD  60
LQDLCKIGTE EQNEWYFFSH KDKKYPLLKP FFTLIMVLFV FLDLCKIGTE EQNEWYFFSH  120
KDKKYPTGTR TNRATKAGFW KATGRDKAIY SRHSLIGMRK TLVFYKGRAP NGQKSDWIMH  180
EYRHETNENG TPQASTIISS HLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-431518314139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7752963e-92KC775296.1 Jatropha curcas NAC transcription factor 018 gene, complete cds.
GenBankKR6052033e-92KR605203.1 Manihot esculenta NAC transcription factors 65 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022772743.15e-94NAC domain-containing protein 7-like isoform X2
SwissprotQ9FWX23e-89NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A067DZX03e-94A0A067DZX0_CITSI; Uncharacterized protein (Fragment)
STRINGXP_010093669.11e-93(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36862661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-91NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]