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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_33243_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 28986.9 Da PI: 9.9927 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.1 | 1e-10 | 154 | 201 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++ L++l+P + +k + Ka+iL + ++Y++ Lq Neem_33243_f_1 154 SHSLAERVRRAKISVRMTLLQSLVPGC----DKIVGKAQILDEIIKYVRTLQ 201 8*************************9....899****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.02E-8 | 148 | 205 | No hit | No description |
SuperFamily | SSF47459 | 3.79E-14 | 148 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.5E-15 | 150 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.494 | 150 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-8 | 154 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-8 | 156 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAAFSYQHPT FVFDSFLVPD TSNNMSSLPQ EATIIRARSC FSPMLPSTAN KCFQDIPLLA 60 QIHETTSPLH KFNSSIGKQD PNSSPAVAQI SSGDHMVSST EKKRKNVDVK VGRENRGEKE 120 RKNKRCAKKQ KKVAEEAPND YVHVRARRGQ ATDSHSLAER VRRAKISVRM TLLQSLVPGC 180 DKIVGKAQIL DEIIKYVRTL QTQVESLDFH QLPPVLDSSS TQLTSFPDEK TPNPNSILLH 240 QEQNSKCNAT ISREFKLSN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015387149.2 | 2e-65 | transcription factor bHLH137-like | ||||
TrEMBL | V4TFH5 | 3e-64 | V4TFH5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006438852.1 | 4e-65 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22754 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 2e-36 | bHLH family protein |