![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_3287_a_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 172aa MW: 19987.4 Da PI: 9.5166 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.6 | 1.7e-21 | 4 | 136 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +G+rF+Pt++elv+++L +k++ ++ l+ +++++ +d+y Pwd+ + ++ +++ ++fF++ +k ++ gkr nr+++s +W+ k+v Neem_3287_a_1 4 VGYRFRPTEKELVNYFLYNKITPNPvLNDDNAVRVCDLYGDgAPWDIWNvnggNYLLKDEALHFFTQLKKLTPIGKRYNRKIASXVWQXEDGAKAV 99 7************************54555569999**98769****633444333488899****************************999*** PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ kk + + +g + + ++ W+m ey++ Neem_3287_a_1 100 XAXggSKQILXFKKRFQYEDGYNTE-QNGGWIMYEYTI 136 9986556668999999999887777.899*******86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.954 | 2 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-16 | 4 | 136 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-22 | 4 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 172 aa Download sequence Send to blast |
MPKVGYRFRP TEKELVNYFL YNKITPNPVL NDDNAVRVCD LYGDGAPWDI WNVNGGNYLL 60 KDEALHFFTQ LKKLTPIGKR YNRKIASXVW QXEDGAKAVX AXGGSKQILX FKKRFQYEDG 120 YNTEQNGGWI MYEYTINPSL LGEQYSHKAT DYVVCSMKKE RERTAKREGR FG |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015380915.1 | 3e-57 | NAC domain-containing protein 53-like | ||||
Refseq | XP_015382069.1 | 1e-57 | NAC domain-containing protein 53-like | ||||
TrEMBL | A0A2H5QWR0 | 6e-52 | A0A2H5QWR0_CITUN; Uncharacterized protein | ||||
STRING | XP_006492969.1 | 1e-56 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19185 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62380.1 | 6e-11 | NAC-domain protein 101 |